Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs3813114 chr18:71815122 G/A 2.24E-5 258 31.98 31.97 6.43 KM Plot
SARC rs3813115 chr18:71815063 A/G 9.97E-6 258 6.43 28.28 32.4 KM Plot
SARC rs3814734 chr11:71192851 A/G 2.68E-5 255 8.62 20.4 33.2 KM Plot
SARC rs3826536 chr17:45501967 T/A 6.35E-5 256 19.97 33.6 32.3 KM Plot
SARC rs3831063 chr11:34979276 GT/G 9.56E-5 248 20.17 29.62 33.48 KM Plot
SARC rs3838794 chr11:71202489 T/TAGTC 2.54E-5 254 8.62 25.65 33.48 KM Plot
SARC rs3851808 chr17:45425144 C/T 2.72E-5 253 19.97 34 31.97 KM Plot
SARC rs3857171 chr4:7005753 C/T 1.74E-5 252 16.17 33.2 32.3 KM Plot
SARC rs4060889 chr17:45427301 T/C 2.67E-5 248 19.97 34 31.77 KM Plot
SARC rs4114873 chr17:45495270 G/A 8.85E-5 258 19.97 34 32.35 KM Plot
SARC rs41382557 chr13:42895839 C/T 0 258 1.07 28.33 32.13 KM Plot
SARC rs41464149 chr13:89443490 A/G 0 258 2.35 30.93 32.3 KM Plot
SARC rs4266409 chr5:28489325 C/T 3.33E-16 258 32.13 33.2 3.1 KM Plot
SARC rs4274691 chr3:38867396 G/A 3.92E-5 247 31.93 35.57 14.82 KM Plot
SARC rs4289298 chr3:38945180 G/A 3.47E-7 254 13.47 36.53 29.62 KM Plot